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Species belonging to selected taxon:

Pinus taeda



ABOUT THIS RECORD

ID: MNEST039423
species: Pinus taeda
source: miRBase, original name: pta-MIR171 (MI0005785)

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGACGAGTCCATATC

miRNA*
TCTGTTATTGTTCTCGATACACA

mismatches: 4
bulges: 2

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pre-miRNA
TGTGATTGAGACGAGTCCATATCTTCTTCAGGCGAAGCCTCCACCACTCCAAAAGAACTGAATGCAGGTTTCCGATGCATCAATCTCAGTGCACTAGACA
ATATCATGTTGGAGGGTACAGACAGTGCCGCCATGTTTGGATGGAGGAGACCCAGGTCTGTTATTGTTCTCGATACACA


dot-bracket secondary structure
.(((((((((((((...((.((((.((((....)))).((((.(((.((((((.(.((((((((((.........))))).....))))).)........
.........(((..(((((.....))))).)))..))))))))).))))....)))).))...))).))))))).))).



SIMILARITIES
miRBase no hits

PMRD pta-miR171: 7e-99

microPC no hits
UniProt no hits

RFAM no hits

Identical with: pta-miR171 from PMRD (MNEST051561)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
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references

[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"




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